rs3682567 SNP Detail

Summary

• ID
  rs3682567
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148794109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC CGAGCGGCAA ATTCAGTCTC
  W
  GTTAGAGATT AAACAATGGG GGAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5058609	WI_WGS_3_149633462	WI	MOUSE	f	SNP	T			A
ss45449272	mCV23013555	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A	A
ss136066831	ENSMUSSNP1276942	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		A
ss321017256	CHEV_3_148751437	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3682567					SNP	T	T	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148794109 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587258	regulatory region 587258	1467 bp distal
Rr587259	regulatory region 587259	809 bp distal
Rr587260	regulatory region 587260	350 bp distal
Rr587261	regulatory region 587261	within coordinates
Rr587262	regulatory region 587262	249 bp proximal
Rr587263	regulatory region 587263	1338 bp proximal