rs3682677 SNP Detail

Summary

• ID
  rs3682677
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71065552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC ATAGACATAC ATGCAAGCAA
  R
  ACACCAATAC ACATGAAACA AAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss5058720	WI_WGS_8_70018347	WI	MOUSE	f	SNP	A			G
ss46225557	mCV22785620	ABI	CRAMUS_MOUSE	f	SNP		A	G	G
ss145127969	ENSMUSSNP1398396	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss322700627	CHEV_8_73136801	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs3682677					SNP	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71065552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20477	CpG island 20477	1022 bp distal
Gm45546	predicted gene 45546	84 bp downstream
Rr400904	regulatory region 400904	1757 bp downstream
Rr400905	regulatory region 400905	718 bp downstream
Rr664837	regulatory region 664837	516 bp distal
Rr664838	regulatory region 664838	1952 bp distal
Rr664839	regulatory region 664839	1272 bp distal
Rr664840	regulatory region 664840	742 bp distal