rs36827203 SNP Detail

Summary

• ID
  rs36827203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136803794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGCTATT GTTTGGAATA
  TAGACTGAGC CATATGAGAC GATCTCAAAA CAAACCAAAA CCAATTGAGA AATATTCTAA
  CAATGCAATG CAAACCCTGA GGACATCTTT CCGACCTGTA TAAGGGGATA TGAAACAGGA
  GTGGAGATAA TGAATCTGGG TTAAAGACAA ATACATGCTC TTTACTTTCT CCTTAGACTG
  Y
  TCATTCCACA CGCCAGATGG CAAAATGCAA TCCATTCAAA CATATTTATC TTGATTTAAT
  ACCAAATCAA ATGATTTATG ACTCTCAAAC AAAAGAAATA AAAAATGAAG TATTAGAACT
  CCTCAAACTT AACATTAAAG TATATTCTTA CTAGCACATA TGACTCCTGA TTTATGTATT
  TTGAGGGAAT TAAAAGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51454439	NES13991536	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	T		C	C	T	C
ss321998853	CHEV_6_136775317	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs36827203					SNP	C	C	C	T	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454439	NES13991536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136803794 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	830 bp upstream
Cpgi18110	CpG island 18110	773 bp proximal
Rr380176	regulatory region 380176	228 bp upstream
Rr640072	regulatory region 640072	487 bp proximal
Rr640073	regulatory region 640073	1427 bp proximal
Tssr2044	transcription start site region 2044	1661 bp upstream
Tssr59337	transcription start site region 59337	949 bp upstream
Tssr59338	transcription start site region 59338	965 bp upstream
Tssr59339	transcription start site region 59339	1003 bp upstream
Tssr59340	transcription start site region 59340	1034 bp upstream
Tssr59341	transcription start site region 59341	1618 bp upstream
Tssr63834	transcription start site region 63834	763 bp upstream
Tssr63835	transcription start site region 63835	700 bp upstream
Tssr63836	transcription start site region 63836	918 bp downstream
Tssr63837	transcription start site region 63837	951 bp downstream
Tssr63838	transcription start site region 63838	970 bp downstream
Tssr63839	transcription start site region 63839	1024 bp downstream
Tssr63840	transcription start site region 63840	1255 bp downstream
Tssr63841	transcription start site region 63841	1328 bp downstream
Tssr63842	transcription start site region 63842	1390 bp downstream
Wbp11	WW domain binding protein 11	within coordinates