rs36827501 SNP Detail

Summary

• ID
  rs36827501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34524575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTAAGG GGCTTCCTCC
  TTGTCTAACA GTCGAATGAA GACATTCTCA GCCTCCTAAA CTTATTAGTA AACGCTGCAA
  CAGGCTATGA GTGCTCTGAT CAACCCAGAC CTCAACCCAT TTGAAACATC TGCAGGGTCT
  GCGGGAAAGC TCCTGACCCA CAGCTAGCTC CAAAGGAGAA AGCATACTTG ATCTGCCTCG
  R
  AGGTTCTGAC CTGATGGCGA CCCGCCAAGT GACATGCCTG GGAAGATTTC ACAACTGCTG
  TCTCCAGGTT GGGTGGCAGA AACGAACGGT AAACTGGGAG GTTATGGGAC TAGAAAGAAG
  GTCACCTAAC ATTTGGGGCA TGAAGATGGG CCCGCGGGAT GGGCGGGGCC GGCGTGGGAG
  ATTCCTTCAG ATCATTCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51237329	NES14284671	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36827501					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237329	NES14284671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34524575 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	78 bp proximal
Gm32566	predicted gene, 32566	within coordinates
Rr409037	regulatory region 409037	1045 bp distal
Rr409038	regulatory region 409038	595 bp distal
Rr409039	regulatory region 409039	within coordinates
Rr409040	regulatory region 409040	429 bp proximal
Rr409041	regulatory region 409041	708 bp proximal
Tssr36	transcription start site region 36	165 bp downstream
Tssr11221	transcription start site region 11221	430 bp downstream
Tssr11222	transcription start site region 11222	454 bp downstream