rs36828417 SNP Detail

Summary

• ID
  rs36828417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60725317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCCTCC ATGAAGTGTT
  GTCTGCTGCC TCACACAACT TGTTGGCAGT GGGTGTTCCC TGTGACAATT TATAGGACTC
  TGTGTTTCTT GTATTACTGA CTGACTTTCA GGAGCCAGGG AAGGCTTCGT CACAGGAATC
  AGCGCTAACT AAGATTGACT GATCTGCTTT TCCAGTGGCG AGGTCCACAG GCTAGTTCCT
  R
  TAGCTGAACA AGATGATTCC CTAGGGAAGT CCAATTCTAT CATAATCAAA TAGCAACTGT
  ATTTAGAAAT TTAATATCCT TTAATATCAC AAGGGAAACT TCTTAGCTAT TCTATACCTC
  ACTGCAGCGT GTGGGGGGAA ACAATTACTA TTTCAAAGTT ATTAAATTTG CTAAAAATCC
  ATCAGTTAAG ATTATCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50715217	NES14255731	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36828417					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50715217	NES14255731	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60725317 () rs orientation: forward

Symbol	Name	Function Class
Rr196167	regulatory region 196167	1084 bp proximal
Rr201055	regulatory region 201055	284 bp proximal
Rr209916	regulatory region 209916	517 bp distal
Rr209917	regulatory region 209917	117 bp distal
Rr209918	regulatory region 209918	1284 bp proximal
Uaca	uveal autoantigen with coiled-coil domains and ankyrin repeats	within coordinates