rs36828623 SNP Detail

Summary

• ID
  rs36828623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42266949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAACCG TGGTCGCATG
  CTTCTGAAAC AGTGGAGCTT TCTGGGGAAG GAAGTGGGGA GTCGTACCCT GGCCTGAGGT
  CTTCAAAAGA GCCAGGGGCA GTGTGACCCC GAGGAGGACC CACGGGGTCG CAGAATCTAT
  GGTTCTCAGT CTCCCTGTCT GCAAAGCATG CGGCAGAACT AGAAGACCTC TCAGGTGCCT
  Y
  GGCACTAGCT GCTTGGGGAG TCTGTTAGTG CTGATGGAGA CTGTCTAGAA AAGTGCCGTG
  GCTTCCAGCA GCCTCTGCTC TGTGCGGCCC AGCCGACCTC ATGCCTACCC AGCTCTATTT
  ACTTTATTTA TATCTTTGGC AATGATGCCC CGTGAGCACT ATGTTGAACC TGGCATATGC
  CAGGGCCAGG GAGCTGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50818823	NES13546223	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		T	C		T
ss325811987	CHEV_19_42353000	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs36828623					SNP	T	T	T	T	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50818823	NES13546223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42266949 () rs orientation: forward

Symbol	Name	Function Class
Gm34347	predicted gene, 34347	1140 bp upstream
Mir3085	microRNA 3085	1572 bp downstream