rs3682929 SNP Detail

Summary

• ID
  rs3682929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19298188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGCCCTA TACTTTTATC
  TGGACGCCTC AGCTTCATTG CTTAGATAAG CCCCACAAGT TTTAGCCTGA GATAGCTACA
  CTACTAACTT TTAAAGACTA CAGCAGAGGG TGGGAAGACA GCTCAGCAAC TCCGTTCCAG
  AGGGCCTGAA TTCTGCTCTC AGCACCCATA GTTCACAAGC ACCTGTAACC CTAGCTTTGC
  Y
  GACTGCCTAT CTTTTTCTGG TCTCCGTGTG CACCCACACT CCCATGGCAC ACAGACATAA
  ACACCTCCAT TTAAAAATTT TAAAACAAAG AAATGTTAAG CATGGCACCA CTCTCCATGG
  GATACAACTA AAGAGAGAAG CAGAAAAGCT GAGTATGGTG GCCTGACCTG TAAGTAATCC
  AGCACTCGGG TGGCTGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C3H/HeJ	C57BL/6J	DBA/2J
ss5058972	WI_WGS_7_14604052	WI	MOUSE	f	SNP		C	T
ss148478886	ENSMUSSNP1670991	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C3H/HeJ	C57BL/6J	DBA/2J
rs3682929					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19298188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	1454 bp distal
Gemin7	gem nuclear organelle associated protein 7	686 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	1187 bp upstream
Rr643188	regulatory region 643188	1756 bp distal
Rr643189	regulatory region 643189	697 bp distal
Rr643190	regulatory region 643190	304 bp proximal
Rr643191	regulatory region 643191	388 bp proximal
Tssr70931	transcription start site region 70931	1862 bp upstream
Tssr70932	transcription start site region 70932	1826 bp upstream