rs36830139 SNP Detail

Summary

• ID
  rs36830139
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35745632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTATGTTG CTTCTGCTGC
  CTGCGTGCTC TCCTGTGAAG ACTTGTCTCT TTGGGATCTG GGATACAAGA TGGCATTCTC
  ACCTGGTCTC ATGGACAGAG AGACTAGACA GTAGTTTATG TGGCAATCCT CCATGCTCTA
  AAGAATGAAC ATGTCAGTAT CTTTCAGAGT TTATTCAACA CCAAACACAG CTCTTCTGCT
  K
  GGATACCTCA GGAGATAATC CTTGTCTGGC TAGGATGTCT GCTTGGGCTA TTTGAAATCC
  ACTCTGCTTT CTAATGTTGT GAAGACTGCC TCTTCAATTG TGCTTGTAGT GATCATCTGT
  AGTATCTGTA GAGAGTCCCA ACCAACCATG CTGCTGTGAG AGAGTCTGCC AGCAAAAGAG
  CTAATTGTCT CAGTTTCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50672087	NES14009032	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		G	G	G		T
ss322901329	CHEV_9_35641921	CHEVERUD	SCREENING_POP	f	SNP									T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36830139					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50672087	NES14009032	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35745632 () rs orientation: forward

Symbol	Name	Function Class
Gm36974	predicted gene, 36974	1051 bp upstream