rs36830296 SNP Detail

Summary

• ID
  rs36830296
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8545657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATGATC TGAGGTTTGA
  TTTTATTTTC ACCAAATATT TCTTGAGAAG TCGTGAACTT TATTAAAAAT ATGTGATTTT
  TTATTGGACA TAAAGAACAT GTTAGACAGG TAGGGGTAGA AGATACTAAG TAGAAATTTG
  ATTTGGGAAT ATGTAAAGGT AAGGACATTC AGAATAAGAA CATTTTGGGC TTTATAGTTT
  W
  AAAAAAGAAT TAGAGTTTCT TGTTTGAAAA GTGAGGGAAG TGAAGGATAG AGAATTTTGG
  ATGTGGTCTA TGAAAACCCT CCTTATCAGT TTGTTGTCAT GATGTTAGGC AAGCTTGGAA
  ACTGAAGCGG GTTGCTTTTA CCATCGTCCA TGCTATCAGC TCTATAATTT CTTCATGATG
  CACCTTTGCT TTTCCTCAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51549924	NES14866484	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36830296					SNP	T	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51549924	NES14866484	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8545657 () rs orientation: forward

Symbol	Name	Function Class
Glcci1	glucocorticoid induced transcript 1	within coordinates
Gm45062	predicted gene 45062	within coordinates
Tssr54920	transcription start site region 54920	1070 bp downstream
Tssr54921	transcription start site region 54921	328 bp downstream