rs36830386 SNP Detail

Summary

• ID
  rs36830386
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83689712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTTTCTG TCACCCAAGT
  CAATATCTTA GAGCAGGTGG AGTACAACTT TCCTGACCCC CACCACCACT GTCACCATGT
  GAGTGGCCCT GGGGATCTGA GAGCCAGCTA GGGCAGGGCA TGGAGGTACA GGAAGCTCTC
  TTAAATTAAG ACGCTGCCAG GGACCCTGAA TAAAGAAACA CTCCTGGGAA TAGGTGTGGT
  S
  ATTGGAAGGC TGGGTGGCTA CTGCCATTCT AGGGACCCGC TTGATGGTGT AAGACAGTTA
  CACCACCAGG AATCCCCGCA GGTGTGAGGA CTTGTAGGTT ACCTGGGGTT AATATGAATT
  CCCTTTTGTC ATCTGAGGGG TTCTAAGGAC AAGGAGCGAC CACCAGTTGA GTTTCGTTGA
  GGGAATCTGC AAGCCTTCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	MOLF/EiJ	WSB/EiJ
ss51352649	NES13742464	PERLEGEN	MM_PANEL2	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	MOLF/EiJ	WSB/EiJ
rs36830386					SNP	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51352649	NES13742464	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83689712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	300 bp distal
Cpgi17612	CpG island 17612	1836 bp proximal
D6Mit8	DNA segment, Chr 6, Massachusetts Institute of Technology 8	1139 bp proximal
D6Mit8.1	DNA segment, Chr 6, Massachusetts Institute of Technology 8.1	1296 bp proximal
D6Mit8.2	DNA segment, Chr 6, Massachusetts Institute of Technology 8.2	1094 bp proximal
Gm32943	predicted gene, 32943	68 bp downstream
Gm55235	predicted gene, 55235	1798 bp downstream
Gm66907	predicted gene, 66907	1819 bp upstream
Rr632917	regulatory region 632917	1809 bp distal
Rr632919	regulatory region 632919	1456 bp distal
Rr632920	regulatory region 632920	32 bp distal
Rr632921	regulatory region 632921	1329 bp proximal
Rr632922	regulatory region 632922	1830 bp proximal
Tssr57361	transcription start site region 57361	1442 bp downstream
Tssr57362	transcription start site region 57362	1806 bp upstream
Tssr61702	transcription start site region 61702	1865 bp upstream
Vax2	ventral anterior homeobox 2	within coordinates
Vax2os	ventral anterior homeobox 2, opposite strand	529 bp upstream