rs36832788 SNP Detail

Summary

• ID
  rs36832788
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113656897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCAGCC CCGCAGAACA
  GACACACAGC CTGAAAGCAT AGCCAGGCAC TGACTGGCAG GAGAAGGCAG AAGGCCCCTC
  CTCCATGGTT GGGGGTCCAG CGTGGCTTCC TTGGGGAGAT GGCATCCCAA GTGGAGTCTT
  TGGAATGAGG AGTGGAACAA GGTCATGGTG TAGACTGTGT CACGGCAGGT CTTTAGCTCG
  M
  CGCGTTCAGC ATGTAGCTTT GTGGGGAGGT TGAGAAAAGA CAGGAAAGTG TTATTTAAAG
  ACAGCACTGG GGTCAACTAT GTGGTGCCCC ACATCTGTAA TCCCTGCACT GAACACTTAG
  GAAGCTGAGG CAGGAAGTTC CACATTTGGG GGAGTTCCAG GCCAGCCTGG GCTACACTGA
  TCCCTTAACA GTAACCCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51794427	NES14722610	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36832788					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794427	NES14722610	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113656897 () rs orientation: forward

Symbol	Name	Function Class
Rr617638	regulatory region 617638	1888 bp distal
Tssr48022	transcription start site region 48022	1808 bp upstream
Tssr48023	transcription start site region 48023	1868 bp upstream
Tssr52639	transcription start site region 52639	1863 bp upstream
Wscd2	WSC domain containing 2	within coordinates