rs3683447 SNP Detail

Summary

• ID
  rs3683447
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51260690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC ACCCATAGCA GGATGCCTTA
  M
  TAAGAACTGA TCCTGGCACT GAAAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss5059492	WI_WGS_3_51787600	WI	MOUSE	f	SNP	C				A
ss49598457	NES12919487	PERLEGEN	MM_PANEL2	f	SNP			A	A		A		A	A	A		C
ss135172821	ENSMUSSNP3829537	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss320762368	CHEV_3_51157191	CHEVERUD	SCREENING_POP	f	SNP							A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3683447					SNP	C	C	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598457	NES12919487	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51260690 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	102 bp proximal
Rr576283	regulatory region 576283	284 bp proximal
Rr576284	regulatory region 576284	943 bp proximal
Rr576285	regulatory region 576285	1995 bp proximal