rs36834579 SNP Detail

Summary

• ID
  rs36834579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60660032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGGCCCT CCCTTTTGGG
  AAGTTCTGAC CCTCCTGTTA CCAGAACCTG GACTCTGCCC AAACAGCTTG CCCAGTTTCT
  TGAGGCAGGC CAAGCAAGGA CCAAAGCAAG AAGACTGTAA TAGGTTGACT TGAGTGGCAA
  ATGCATAGAT CGGTCTGTAG TTTAAAAAAA AAAAAAAAAA AAAAAGCAGC TCAGAGTTCT
  R
  GCCACAGACC CAGACGACGG CCATTGCAAT AGAATTGTTC AGCTTAATGA TATTAAAAAA
  AAAAAAAAAG CACCCAATGA AGTCCCATAC CTTCTGCAGC TTTTGATAGA AGTTGTCTAT
  CTACTATGCT TCTGGGATTA AAAATGAGTA AACCATAAAT CCTACTGTTG GGAATCAGTC
  TGTTGAAAGC TCATACTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50418790	NES13463012	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G	A	A	G	G
ss147246228	ENSMUSSNP2825794	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36834579					SNP	A	A	G	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418790	NES13463012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60660032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	239 bp distal
Dctn4	dynactin 4	within coordinates
Gm58902	predicted gene, 58902	533 bp upstream
Gm58903	predicted gene, 58903	1462 bp downstream
Rr351670	regulatory region 351670	1759 bp proximal
Rr352957	regulatory region 352957	within coordinates
Tssr151313	transcription start site region 151313	726 bp downstream
Tssr153448	transcription start site region 153448	974 bp upstream
Tssr153449	transcription start site region 153449	881 bp upstream
Tssr153450	transcription start site region 153450	857 bp upstream