rs3683649 SNP Detail

Summary

• ID
  rs3683649
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107377881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCACCCA TTATGCACTG
  TGCCCTCTTC TTTCTGGGAC AGAGGCAAAG ACCACCACCC GTGGCTCCAG GTTGGATAGA
  GGAGATTGAG AAATGGCTAA GCCCTAGTTA AAGTGACCCC ATCACTGTGC TCTCCGGCAG
  GACCTGTAAA TAGGGACATT TAAAGGCTCC ACGAGCTGGC TGTGGATTCA TTTCATTCGA
  Y
  GGCAGCATTC ATGCTTAAGC CTGAGAGGTC TCCACCTTTC TCAAAAGACA GAATTGAAGA
  GACTCCATAT ACCTTCTGGC AAAGCAAAGC CTGAGACCTG ATACACGCAT CCCTAACCCT
  ATCTTAGCTC AGGAGGAGCC TGGCAGGGCT GGACAGGACG ATGAGTCTTT TGGCAGGCTG
  GGCTAACGCC TACATCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss5059697	WI_WGS_3_107963862	WI	MOUSE	f	SNP	C						T
ss45486153	mCV24920064	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss46855965	NES10709946	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		C	T	T	T	C	T	C	T
ss135584351	ENSMUSSNP2391147	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs3683649					SNP	C	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855965	NES10709946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107377881 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	809 bp distal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates