rs3683668 SNP Detail

Summary

• ID
  rs3683668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107377889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATGCAC TGTGCCCTCT
  TCTTTCTGGG ACAGAGGCAA AGACCACCAC CCGTGGCTCC AGGTTGGATA GAGGAGATTG
  AGAAATGGCT AAGCCCTAGT TAAAGTGACC CCATCACTGT GCTCTCCGGC AGGACCTGTA
  AATAGGGACA TTTAAAGGCT CCACGAGCTG GCTGTGGATT CATTTCATTC GATGGCAGCA
  Y
  TCATGCTTAA GCCTGAGAGG TCTCCACCTT TCTCAAAAGA CAGAATTGAA GAGACTCCAT
  ATACCTTCTG GCAAAGCAAA GCCTGAGACC TGATACACGC ATCCCTAACC CTATCTTAGC
  TCAGGAGGAG CCTGGCAGGG CTGGACAGGA CGATGAGTCT TTTGGCAGGC TGGGCTAACG
  CCTACATCCT GCACCCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss5059716	WI_WGS_3_107963870	WI	MOUSE	f	SNP	C					T
ss45560255	mCV24920065	ABI	CRAMUS_MOUSE	f	SNP	C	T				T		T
ss46855968	NES10709947	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T		C	T	T	C	T	T
ss135584354	ENSMUSSNP523532	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs3683668					SNP	C	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855968	NES10709947	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107377889 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	817 bp distal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates