rs36838105 SNP Detail

Summary

• ID
  rs36838105
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGAGAT GACGTGGTGG
  GGGCTTAGGA ACCTGAGTAC ACATGGGAAG GACGTTCTGA ACCGGATCCT ATGAGCAGCC
  CTCCAGTCCT TGTGGAGCGC ACCATAAAGA CCTCAGCTGC TAGGGTGAGT TTCACTGGAA
  GAATACACAG AATGGACTCT ATTGGAGGAG CTCAAAGACA CCCAGTCAGA GTCAGGCAAA
  M
  AGGGCCTTCC AGGAAAAGGA ATGGAGCTTG AACCTTTCTG AGCCACCCCC TCCACTTTCT
  ACTTCTTTTC AAGTCCTGGA AGCAGAGAGC TAGCTCTTGG TGCATCTCGA AGTGGCTGTG
  TCCCCGTCCT TCTGTCTCTA CACCCTTTCC TTCCCTCGCT TATTTCCCCA TTTCGGGGTA
  TTCTGCATGA GCTCTGTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51365832	NES14471122	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36838105					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365832	NES14471122	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672129 () rs orientation: forward

Symbol	Name	Function Class
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	362 bp downstream
Tssr8661	transcription start site region 8661	196 bp downstream