rs36838302 SNP Detail

Summary

• ID
  rs36838302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:64979148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATATAAAAA TCATGAATTT AATCTTCAGG TTTTTTTGGG
  GGCCCAGCAA ACCTTACTTT CTAGCAATTG CTAAACCCAT CTCTCCCATA GCTTTTTGGG
  R
  ATCACACACC TCCGGATCTA AAGTATGTCT CCTTAAACGT CTCTATTTCT TTTTATTGTT
  TCTCATAGTC CTTCCCGTCG AATTACATAG AATCGATGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51142120	NES13844171	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36838302					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142120	NES13844171	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64979148 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Klf3	Kruppel-like transcription factor 3 (basic)			Intron
				Noncoding-Transcript-Variant
Rr612115	regulatory region 612115			1929 bp distal
Tssr46420	transcription start site region 46420			846 bp downstream
Tssr46421	transcription start site region 46421			110 bp upstream
Tssr46422	transcription start site region 46422			273 bp upstream
Tssr46423	transcription start site region 46423			312 bp upstream
Tssr46424	transcription start site region 46424			415 bp upstream
Tssr46425	transcription start site region 46425			1179 bp upstream