rs3683852 SNP Detail

Summary

• ID
  rs3683852
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:57072338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA AACGAAATGC TAGGAAGAAA
  W
  ATTCGTAGTT TCTTTCTTCA TTAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss5059901	WI_WGS_2_57713733	WI	MOUSE	f	SNP	T		A
ss146633831	ENSMUSSNP3661254	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T		A
ss320314321	CHEV_2_57034737	CHEVERUD	SCREENING_POP	f	SNP					T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs3683852					SNP	T	T	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:57072338 () rs orientation: forward

Symbol	Name	Function Class
4930555B11Rik	RIKEN cDNA 4930555B11 gene	within coordinates
BB557941	expressed sequence BB557941	572 bp upstream
Cpgi11661	CpG island 11661	181 bp distal
n-TAcgc8	nuclear encoded tRNA alanine 8 (anticodon CGC)	177 bp downstream
n-TGgcc8	nuclear encoded tRNA glycine 8 (anticodon GCC)	68 bp downstream
Rr396968	regulatory region 396968	46 bp downstream
Rr557184	regulatory region 557184	584 bp distal
Rr557185	regulatory region 557185	508 bp distal
Rr557186	regulatory region 557186	within coordinates
Tssr24122	transcription start site region 24122	564 bp upstream