rs36839381 SNP Detail

Summary

• ID
  rs36839381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:28905940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCAGGAA GTGGGGAAGC
  CTGAAGGGGT CTGAAATGTA GGTGCAGGAG TATGGGGACA TCCTCTTGAA GACAGGGGTA
  GAGGAATGGG ATGAAGAACT ATCAGAGGGC AGAACGGGAA CAGGATAATG ATTGAACTGT
  TAGAAAAAAA AAAGAGTAAA GATTAAAAAA ATACCCCTGT ACAGACTTAC CAATTTAAGT
  Y
  AAGAACAGGT GGACAAATGG GCATCTCAAA ACCATATTTG AAATATTAGG CATAAAAATT
  ATTGAAAACA TCAAACCACC AAATGGTTAA ATAAACAAAA CAAAATAACT CATTAGAATC
  TTATATGACA GGTTAACAGC GCTCAGGACT CGGCGTGCGC GTGCCTTCCA ACTCTCCATC
  GCCATGGCCG CCGACATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50836135	NES14188920	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36839381					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50836135	NES14188920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:28905940 () rs orientation: forward

Symbol	Name	Function Class
Gm9824	predicted pseudogene 9824	184 bp upstream
Gm68174	predicted gene, 68174	155 bp upstream
Rr429457	regulatory region 429457	65 bp proximal
Rr429458	regulatory region 429458	166 bp proximal
Tssr92858	transcription start site region 92858	125 bp upstream
Tssr92859	transcription start site region 92859	793 bp upstream