rs36839996 SNP Detail

Summary

• ID
  rs36839996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61926506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGAAAA AAAAAAAAAA
  CCCAAAAAAC AAAAACCACA TCAAATGGCT ATGTCGTTTC ATCGGAAGGA CAAGCATCTT
  GGGTCTCGTG ATGTTTGTTT TGATCCAGGT GGCCCAGTGT GTTAGGGACT GGGAGGAAGG
  CACACTTATG TTACAGTCAG GTGTGGTACT GGGAACCAGA GATGGCATAA GGCTATGGGC
  R
  ATCTTTTCCA GGGCTGAAAG ACAAACTCCT AAACCTTTGT ACTGGCTTTT CCATTTCCCC
  AGCGACTCAC ACATCTTGCC ATGAGCTTTC ACAGGGACAG ATACATGCCC CATTGGGTTG
  TGGTCACCCC TCACATGGGC GGCACATAAG ACTACATTGT CAGCATTAAT ACAGCGTGTT
  TGTCATAACT CTTTTGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50425674	NES13465434	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36839996					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50425674	NES13465434	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61926506 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	1418 bp downstream
Rr346544	regulatory region 346544	306 bp distal
Rr346545	regulatory region 346545	95 bp proximal
Rr351728	regulatory region 351728	361 bp distal
Rr354902	regulatory region 354902	1106 bp distal
Rr356351	regulatory region 356351	259 bp proximal