rs36840153 SNP Detail

Summary

• ID
  rs36840153
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114338178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCAATC CTGCATCCCT
  GAACATCCCT GCATCTAGAG AGGGTCTCCC ACATCCACAC CCTCCCCACT GGATTAATAC
  TAGCCCTTTT AAGACCCATC CGGTGCCGAC GTGAGGTAGA CAACTTTTTG CCAAAATTGA
  GGTAGAAAAT CCATACTAAA CAAAATCAGT GTGGTTAGGG GCGGTGTCCT GCCCTGTGAC
  M
  CTGGCTCACA CGAAGCCAGA GAAAGCCCCA GTCCTATGTA ACTGTACACA CATGATAGCA
  TCATTTTCAT ACAGCCCCAG ACTGTCAGAA CCTCACTAGG AGAGATGTTC TAAATAAATA
  CATTTTGGCA CCACTGCGTG TGTGTGTATA TTACACACAC AGACACACAC ACAGACACAC
  ACACACGCGC ACACACACGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52042483	NES15055429	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36840153					SNP	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52042483	NES15055429	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114338178 () rs orientation: forward

Symbol	Name	Function Class
Rr198888	regulatory region 198888	823 bp proximal
Rr207539	regulatory region 207539	423 bp proximal
Rr368881	regulatory region 368881	868 bp upstream