rs36840455 SNP Detail

Summary

• ID
  rs36840455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109596854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCTAGA GAGATCTTTG
  CAGAACAGAG TTAGGTACAT CCTTCGTAAA ACACACAAAC CATCTCCCTA AAGCACAAAC
  TTCTCCAGGG CTCTCCTGCT CACATGGTGA GCCGTGATCC CAGGTGAATA GAGGTAAACC
  AGGACTTTTT GTGCCACAGG CTGTGGTTCC CCCACCTGCA ATCTCTTAGA GGCTGACTAA
  R
  TACCTCTAAG TTAGTTACCT ACCCCTAAGT TAGTTACCTA CCCCTAAGTT AGTTACCTAC
  CTCTAAGTTA GTTACCTACC CCTAAGTTAG TTACCTACCC CTGTTAGTTA CCTACCCCTA
  AGTTAGTTAC CTACCCCTAA GTTAGTTACC TACCTCTAAA AGTTACCTAC CCCTAAGTTA
  GTTACCTACC CCTAAGTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51054027	NES14376489	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36840455					SNP	G	G	G	G	G	G	G	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51054027	NES14376489	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109596854 () rs orientation: forward

Symbol	Name	Function Class
Gm24564	predicted gene, 24564	654 bp upstream
Rian	RNA imprinted and accumulated in nucleus	within coordinates
Rr387772	regulatory region 387772	1001 bp upstream
Tssr115150	transcription start site region 115150	1337 bp downstream
Tssr115151	transcription start site region 115151	314 bp downstream
Tssr115152	transcription start site region 115152	1505 bp upstream