rs36840480 SNP Detail

Summary

• ID
  rs36840480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:47445572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATGGAT TTCTGGGCCA
  AAGGTAAAAT GTTTCCGTTT TAGGAAGAAA AAAAGCCAAC TTTTCTATCA TTGAACATTT
  CTACTAGTTA GAACAAAGTT GCACTTTTAA AAAAGATTTA CTTTTATTTA TTTCAAATTA
  TGTGTGTGTA GGGGAGAGGT ATGTGTGCAT ATTTACATAC AGGTGCCCTC CAAATCTAGA
  Y
  GAGGCATTGT CAAAACCCTG ATTGTGCTAG AAACTTTGGA CCTCTGCAAG AGCCCCAAAC
  ACTGTTTATA GCTGAACCCT CTCTCCAGCC CCTTGAATGT TAATTGTTAT TGTCTGTTCT
  GGAATTGAAA GAGAAATTGT TGGAGGTTTG AAAGTACCAA TCTGCGATAG CCATTGTTGT
  CTTTCAGTCT TTATCTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51653637	NES14830147	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36840480					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51653637	NES14830147	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:47445572 () rs orientation: forward

Symbol	Name	Function Class
Cul1	cullin 1	within coordinates
D6Dcr7	DNA Segment, Chr 6, Derry C. Roopenian 7	615 bp proximal
D6Mit352	DNA segment, Chr 6, Massachusetts Institute of Technology 352	618 bp proximal
Tssr56089	transcription start site region 56089	506 bp downstream
Tssr56090	transcription start site region 56090	283 bp downstream