rs36842389 SNP Detail

Summary

• ID
  rs36842389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47776850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGCAC GGAGAACAAC
  CACTTTACCA AGAAACCAGA AACGGACGAG AGCGACTCAT CCGGGCCAGG GATAAGGAGC
  TGAGTGCTCA TTTAGCCTCA CCTTCTGGTA ACATGACTGG CAGGGTGAAG TATTCCAGCC
  TGCTTCTGCC CATATCTGGA AGCGGGTACA ACACCAGCAC TTCGACCACA TCTGACTCCA
  Y
  GACAGACACC GTGGATATCT GCAGGATGTC CTTGCCCGTC TCTGAAAGTG AATGGGGATT
  GACTGTGTTA AAGAGCCCTG CATCATTCTA ACTAAGACAG GAGAGAGACT ACTTTCCTCA
  AATTCTCAGC ATGATCCTTT GTTAATATTG AATATTTTAA ACACACACAC ACACACACAC
  ACACACACAC ACACACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50857460	NES13520313	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36842389					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50857460	NES13520313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47776850 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	1296 bp distal
D19Dcr56	DNA Segment, Chr 19, Derry C. Roopenian 56	130 bp proximal
Rr358623	regulatory region 358623	351 bp proximal
Tssr159755	transcription start site region 159755	1282 bp upstream