rs36842487 SNP Detail

Summary

• ID
  rs36842487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTCTAT TGTTTTTCTT
  GGTAAAGAAC TCTCAGTTTT CGTTTTTACT ACCTCTGTCA CCCAAGAGTT GGCATCTCAA
  CAGAGGGGAC TTTCCGAGAG GCCATCTGGC AGTTGCTTAA GATCAGAAGT GAAGTCTGCC
  AGTTCCTCCC AGGCAGGTGG CCCAGATTAC AGTTGACCTG TTCTGGTGTG GCTAAAAATT
  R
  TCCCATGTGG TTACAAACCA TTAGACCAGG GTCTGATGAA TTGCTCAGAA TATTTCTGGA
  CACCCAAATA CAGACCCTGG CTTAAGGCCC TGTCCATACA GTAGGTTTAG CTTGGCTACA
  CCAAAGGAAG CCATACAGAG GCTAATATCA GAGTATTCTT GGAAGAGACA GGAGAAAATG
  AAAGCCAGTT TCTGCTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676674	NES14820441	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36842487					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676674	NES14820441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702854 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	576 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	565 bp upstream
Igkj5	immunoglobulin kappa joining 5	1947 bp downstream
Rr158	regulatory region 158	81 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	435 bp downstream
Rr399685	regulatory region 399685	23 bp downstream
Rr399686	regulatory region 399686	641 bp upstream
Tssr1880	transcription start site region 1880	980 bp upstream
Tssr56955	transcription start site region 56955	1970 bp downstream
Tssr56956	transcription start site region 56956	37 bp downstream
Tssr56957	transcription start site region 56957	560 bp upstream
Tssr56958	transcription start site region 56958	607 bp upstream
Tssr56959	transcription start site region 56959	625 bp upstream
Tssr56960	transcription start site region 56960	648 bp upstream
Tssr56961	transcription start site region 56961	662 bp upstream
Tssr56962	transcription start site region 56962	670 bp upstream
Tssr56963	transcription start site region 56963	719 bp upstream
Tssr56964	transcription start site region 56964	734 bp upstream
Tssr56965	transcription start site region 56965	740 bp upstream
Tssr56966	transcription start site region 56966	751 bp upstream
Tssr56967	transcription start site region 56967	766 bp upstream
Tssr56968	transcription start site region 56968	790 bp upstream
Tssr56969	transcription start site region 56969	826 bp upstream
Tssr56970	transcription start site region 56970	839 bp upstream
Tssr56971	transcription start site region 56971	859 bp upstream
Tssr56972	transcription start site region 56972	885 bp upstream
Tssr56973	transcription start site region 56973	923 bp upstream
Tssr56974	transcription start site region 56974	955 bp upstream
Tssr56975	transcription start site region 56975	988 bp upstream
Tssr61321	transcription start site region 61321	612 bp downstream
Tssr61322	transcription start site region 61322	777 bp downstream
Tssr61323	transcription start site region 61323	792 bp downstream
Tssr61324	transcription start site region 61324	882 bp downstream
Tssr61325	transcription start site region 61325	948 bp downstream
Tssr61326	transcription start site region 61326	983 bp downstream
Tssr61327	transcription start site region 61327	997 bp downstream
Tssr61328	transcription start site region 61328	1088 bp downstream