rs36843719 SNP Detail

Summary

• ID
  rs36843719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39632272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAACAAAG CACGTCATCA
  GGCTAGGAAG CTCGTGATAT AAGGATAAGG AAAGAAATGT ATTTTAGGGC ATTCATATTC
  ACTATGCGAG TCTGCTTCAA TGAACAGGAT GCAAACACTA TTCTCTAAAA GAAACGGGCA
  TAAGCCTAAC TACAATTAAT GGAACTGGAT TTGAGGGAAG TTATGTTTCA TCTGGTTATC
  R
  AGAAATTTTG TTAAAGCTGT CCTTATTCTT GCTTTATAAA GCTAAATAAA AATAGAAACA
  AAAATTCCTT TGCTAAGGAA TTTTCAAAGA GCTAAAAATT ACAAGAATGT TATTAGTTAA
  TAAGTATTCA GAAATAAAAA CTGTTAAGCT ACTCACAGTC TTAGGACAAT AGTGCCTTTA
  ATTCAGGACT AAAATCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616014	NES14841010	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36843719					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616014	NES14841010	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39632272 () rs orientation: forward

Symbol	Name	Function Class
Braf	Braf transforming gene	within coordinates
Fth-ps2	ferritin heavy chain, pseudogene 2	1550 bp upstream
Tssr1816	transcription start site region 1816	1534 bp downstream
Tssr60501	transcription start site region 60501	1221 bp upstream