rs36843885 SNP Detail

Summary

• ID
  rs36843885
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48531824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCTCCTC TGGTTGTGTA
  ATCTGCGTCA CTTGCGTACC CTGCCAGCCG CAGCGCGTCC CTTAAAAACA ACTTTTTCTG
  CGTCGCACCA CTCCCCGCCC CTTCCGGCCT TTCGCAGGTT CCGGGTCGGC TGGGCCTGCG
  CCAGAAACCG AGTTGCGTGT TCTGTTTGTT TGGGGGATGC TGGATTCTTC TGGAACCGCC
  S
  GCGGTTAGTG GCCACGCCCT CAGCCCCAGG CACTGCTCTG AGTGCAGTTA ACAGACAGAA
  CGCTTTAACC GGTAACAATC GCGGCCGGTG AGGTGGGTGC TGCCTTGGTG GCCAGGAGAC
  ATTAGGATTG GATTTCCTAT CCCACAATCA CAGCCTCTTG GTATACATAA CAACAAGGGT
  TCCGCTAGTG TGATAGATTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51307121	NES13774496	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36843885					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51307121	NES13774496	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48531824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	within coordinates
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	117 bp upstream
Lrrc61	leucine rich repeat containing 61	within coordinates
Rr399635	regulatory region 399635	72 bp downstream
Rr629686	regulatory region 629686	1672 bp distal
Rr629687	regulatory region 629687	128 bp distal
Rr629688	regulatory region 629688	75 bp distal
Rr629689	regulatory region 629689	within coordinates
Tssr56137	transcription start site region 56137	45 bp downstream
Tssr56138	transcription start site region 56138	40 bp upstream
Tssr60734	transcription start site region 60734	224 bp upstream
Tssr60735	transcription start site region 60735	203 bp upstream
Tssr60736	transcription start site region 60736	159 bp upstream