rs36844443 SNP Detail

Summary

• ID
  rs36844443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82985352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAACTCC CTAGACCAGC
  CTATCCTTAA GTGGCCGAAA TCCTCCTGCC TCTACCTCCT CAGGACTAGG CTAGGCTTAT
  AGGTGTGATT AATACACTTG GTTCTCATAA TAATATTTTA GAGTCAGTGC TGCACAAATT
  GTAGTATATT TGTTTTATTT TGTTGATTTG AAGTTTTATG AGACAATGTT TTATCGTCTA
  Y
  CCATGTCTAC CTTTTAAGGG CTGGGATAAC AGGCATGTAT AATTATTGTT ATAGGTAGCA
  TTCAGTGTAT GGGGTCTGTT ACTGCTTGAA GTTTCAGGTA TCTACAGGGG CTCTTGGAAT
  GGGTCCCATA TAGTTATGAG GCATTATTCT CTATTTGCTC CTGTTTAACA GAAAGGGAAA
  CTGAAGATGG AGAGGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51727782	NES14564609	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36844443					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51727782	NES14564609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82985352 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	660 bp distal
Gm17206	predicted gene 17206	921 bp downstream
Rr308146	regulatory region 308146	849 bp proximal
Rr312184	regulatory region 312184	151 bp distal
Rr404540	regulatory region 404540	831 bp downstream
Serhl	serine hydrolase-like	within coordinates
Tssr132408	transcription start site region 132408	941 bp downstream
Tssr132409	transcription start site region 132409	848 bp downstream
Tssr132410	transcription start site region 132410	833 bp downstream