rs36845462 SNP Detail

Summary

• ID
  rs36845462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83481834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCACTCA CACACACATT
  CTCACACCCA GATGTAGAAC TTAAACAACA AAACAAACAA ACAAACAAAC CAAAAAACCC
  AAAAAGGACG GGGGATGGAC TTCAGTGGCA GAACATTTGG CTAGCATGCA CAAGATCTCA
  TGATAAAATA ACTAAGTAAC TAAGTAAACA AATATACATT AGAAAACAAT CCAAACTAAG
  Y
  CTTCCAAGCT GTTCCAGTAA AGATGACTGA GGTTATCACG GCCTCCTCCA GAACACACAC
  CTCATCTATC ACCAGGCCCC CCTGGCCTAC CTTAAACTCT AACTTTCACC GGGGTCCAGC
  TTAGCTTGTT ATACTGCAAT GGCTTCCTAA CTGAAACCTT CCACTTCCTA TGCACTGAGC
  AGAGATGCTT TCATCTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354511	NES13746163	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36845462					SNP	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354511	NES13746163	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83481834 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	1650 bp proximal
Dguok	deoxyguanosine kinase	within coordinates
Rr632883	regulatory region 632883	1859 bp distal
Rr632884	regulatory region 632884	783 bp proximal
Tssr61663	transcription start site region 61663	1404 bp downstream
Tssr61664	transcription start site region 61664	1964 bp downstream
Tssr61665	transcription start site region 61665	1978 bp downstream
Tssr61666	transcription start site region 61666	1986 bp downstream