rs36845553 SNP Detail

Summary

• ID
  rs36845553
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74697260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGTGTTT TGTGTTTGTG
  TCCCCAAATT TAATGCGTCA TGTACTTTGT TTTTGTAGGG GACATGTCTG ATGTCTGAGT
  TTTAACTTTA AGTCGTAATC CCCCTTGGCT GTTATACCAG ATTTGAAAGT ATTTTGTTCT
  TTCCTAGAGC ATACATTCTT GACATAAATT TCATAGATTA TATAAAAGTG AACGTTAGCG
  W
  CTTAAGCAGC CTTTTAGTAA TGAAACTCCG ATAAACTTGT AAAATTGATT ATTTCTTTAG
  TGGAAAGACA GCATCGGTAC TACCCTTAAA ATGTGAAATG TGTGGGGTTT CTCTTAGCAT
  GATGTGTAAA TCCCCTTGTA TTTCTTTCCA TAAGAGATGT GTCTTGCTTA TGAAGTGATC
  TAACTTTGGC TATGCTTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ
ss51157128	NES13841831	PERLEGEN	MM_PANEL2	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ
rs36845553					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51157128	NES13841831	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74697260 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15972	CpG island 15972	448 bp distal
Fip1l1	factor interacting with PAPOLA and CPSF1	within coordinates
Rr399136	regulatory region 399136	1098 bp downstream
Rr613306	regulatory region 613306	1108 bp distal
Rr613307	regulatory region 613307	88 bp distal
Tssr46674	transcription start site region 46674	1075 bp downstream
Tssr46675	transcription start site region 46675	1041 bp downstream
Tssr46676	transcription start site region 46676	908 bp downstream