rs3684618 SNP Detail

Summary

• ID
  rs3684618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA AAACTTGCAT GTTCACGGGC
  R
  TGTGCACATG TTTAATCATC TCCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5060672	WI_WGS_7_92074987	WI	MOUSE	f	SNP		A	G
ss46025513	mCV23440942	ABI	CRAMUS_MOUSE	f	SNP	A		G	A
ss145564841	ENSMUSSNP4990492	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A
ss322353643	CHEV_7_109397441	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3684618					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898134 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	715 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1396 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	1151 bp proximal
Rr652564	regulatory region 652564	1994 bp proximal
Tssr2354	transcription start site region 2354	1332 bp upstream
Tssr68327	transcription start site region 68327	1169 bp downstream
Tssr68328	transcription start site region 68328	693 bp upstream
Tssr68329	transcription start site region 68329	775 bp upstream
Tssr68330	transcription start site region 68330	1293 bp upstream
Tssr73938	transcription start site region 73938	1840 bp upstream
Tssr73939	transcription start site region 73939	435 bp downstream
Tssr73940	transcription start site region 73940	485 bp downstream
Tssr73941	transcription start site region 73941	527 bp downstream
Tssr73942	transcription start site region 73942	615 bp downstream
Tssr73943	transcription start site region 73943	1148 bp downstream
Tssr73944	transcription start site region 73944	1159 bp downstream
Tssr73945	transcription start site region 73945	1200 bp downstream
Tssr73946	transcription start site region 73946	1396 bp downstream
Tssr73947	transcription start site region 73947	1539 bp downstream
Tssr73948	transcription start site region 73948	1564 bp downstream
Tssr73949	transcription start site region 73949	1600 bp downstream
Tssr73950	transcription start site region 73950	1649 bp downstream