rs36846231 SNP Detail

Summary

• ID
  rs36846231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20370421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGATTG TCCAGGGAAT
  TTGCTTTGTT CTCATTTCAC TGAGGTCATT CTAGAACAAG TGATTGGAGG GAAGAAGGAC
  GAGACTTAAT TTATACTTAC AGGGTTCAAG AGGTATAGTG GCATTCTATA CTTTCAATTA
  GAATACCATG GCAACGCCAG CCATTATACT CTTGATACTA TTTTATAATT ATAGTCACAG
  Y
  TCTTTTTCTG GTCGGATTTT ATTATCAGGT TGAAGATCAC CGGCCAGAGT TACATGGCAT
  TGTGTAGATT CAAAGGAGTA ATCTAAACAA ACCCTACAGG TCAGATCAGA ATAATTGGGC
  TCAAATCTGC ATGTAAGAAA GGTTACATTG TGCAGACCGT GAAAGAGTGA CCATCACACC
  AGCATCTCAC TGTCATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51076103	NES14368661	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36846231					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076103	NES14368661	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20370421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	735 bp distal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270988	regulatory region 270988	1221 bp distal
Rr270989	regulatory region 270989	421 bp distal
Rr281054	regulatory region 281054	420 bp distal
Rr403595	regulatory region 403595	887 bp downstream
Tssr118580	transcription start site region 118580	1262 bp downstream
Tssr118581	transcription start site region 118581	1240 bp downstream
Tssr118582	transcription start site region 118582	950 bp downstream
Tssr118583	transcription start site region 118583	887 bp downstream
Tssr118584	transcription start site region 118584	841 bp downstream
Tssr118585	transcription start site region 118585	824 bp downstream