rs36847173 SNP Detail

Summary

• ID
  rs36847173
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6098173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGCAGTGA TGATGGCGGC
  CAGCCTGGCG CTAACCGGGG CAGTGGTGGC TCATGCCTAC TACCTCAAAC ACCAGTTCTA
  CCCCACTGTA GTGTATTTGA CCAAGTCCAG CCCCAGCATG GCAGTGAGTT CAGGGCTCAG
  GGAAGAAGGA ATGCCCGGGG AGGGAAGGAG GGGCAGAAGT GGGGCTACAT GTCATAGAAG
  W
  AGGAGAGAAA TAGCCCTGGG CCGCCTGACT TGGAATTATC TATGACAGTC TTGGGGACCT
  GTCAGAATGA TTAGCCCCAG GCAGGGGAAA GCAGAAAATA ACCTCAAACC ACGACCTTTC
  CTCACCCCCA GGTCCTGTAC ATCCAGGCCT TTGTCCTTGT CTTCCTCTTG GGCAAGGTGA
  TGGGCAAGGT GTTCTTCGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575688	NES13653248	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36847173					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575688	NES13653248	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6098173 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10491	CpG island 10491			410 bp distal
D530017H19Rik	RIKEN cDNA D530017H19 gene			714 bp upstream
Gm59262	predicted gene, 59262			1654 bp downstream
Rr370438	regulatory region 370438			1451 bp downstream
Rr543277	regulatory region 543277			1471 bp distal
Rr543279	regulatory region 543279			1132 bp distal
Rr543280	regulatory region 543280			1029 bp distal
Rr543281	regulatory region 543281			725 bp distal
Rr543282	regulatory region 543282			814 bp distal
Rr543283	regulatory region 543283			751 bp distal
Rr543284	regulatory region 543284			224 bp distal
Syvn1	synovial apoptosis inhibitor 1, synoviolin			Intron
				Noncoding-Transcript-Variant
Tssr154539	transcription start site region 154539			1498 bp downstream
Tssr154540	transcription start site region 154540			1102 bp downstream
Tssr154541	transcription start site region 154541			1063 bp downstream
Tssr154542	transcription start site region 154542			1040 bp downstream
Tssr157817	transcription start site region 157817			1112 bp upstream
Tssr157818	transcription start site region 157818			719 bp upstream