rs36847219 SNP Detail

Summary

• ID
  rs36847219
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:59680490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGC TGATAGCAGT GGTGGGAGAA
  M
  AGTCTAAATT CCTCCTTGCT ATGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51516734	NES14634586	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	A	A	A	C	C		A	C	C	C		A
ss324646632	CHEV_14_60061878	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36847219					SNP	C	C	A	C	C	A	A	A	C	C	A	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51516734	NES14634586	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:59680490 () rs orientation: forward

Symbol	Name	Function Class
Cab39l	calcium binding protein 39-like	within coordinates
Cpgi6560	CpG island 6560	1710 bp distal
Rr404137	regulatory region 404137	1983 bp downstream
Rr493051	regulatory region 493051	1275 bp distal
Tssr129009	transcription start site region 129009	1944 bp upstream
Tssr129010	transcription start site region 129010	1933 bp upstream
Tssr129011	transcription start site region 129011	1734 bp upstream
Tssr129012	transcription start site region 129012	1731 bp upstream
Tssr129013	transcription start site region 129013	1724 bp upstream