rs36848667 SNP Detail

Summary

• ID
  rs36848667
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41019314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTGTTAG CCTTATGTAC AGTGTTAGCT TTAAAAGAGA
  AAGAGATTAG ATAGGTAAAG GGGGAGGGAT AAAACAGAAA AAACATCTTC AAAGAGAAAG
  K
  TAAAAACAGA AATCAAAAGT TTTAGCAGCT ACCAAGATGC TTTTCATGGT AAAGGAACTG
  AACAGGGACC AGTCAGGAAA GGGAGAGCCA TCAGGCAGGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss50828478	NES13536828	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs36848667					SNP	T	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828478	NES13536828	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41019314 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr365008	regulatory region 365008	714 bp distal
Rr365009	regulatory region 365009	114 bp distal
Rr370496	regulatory region 370496	1451 bp downstream
Rr370497	regulatory region 370497	256 bp upstream
Tssr5510	transcription start site region 5510	336 bp downstream
Tssr156412	transcription start site region 156412	1477 bp downstream
Tssr159242	transcription start site region 159242	247 bp downstream
Tssr159243	transcription start site region 159243	277 bp downstream
Tssr159244	transcription start site region 159244	298 bp downstream
Tssr159245	transcription start site region 159245	307 bp downstream
Tssr159246	transcription start site region 159246	1169 bp downstream
Tssr159247	transcription start site region 159247	1183 bp downstream