rs36849046 SNP Detail

Summary

• ID
  rs36849046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47776613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTATA ATTCTAGGTA
  ACTATGCTGT AAAGTATCTG AATTTAACTG GGAATATTTA AAACCACAGA ACGAAACCCA
  TCACATGACG ACAGATCAAC TTGGCATGGC AGTTGATCTT GTTTCTTTTC TCATACTTAA
  GATACAAACA AACACACAAA CAAAGAAACA TCCCTGAGTC CCGAGGCACA GAGGAAGCTA
  Y
  ACTTCACCAT TTCACAGCCA CGGAGTATTG CTTTGCAGAG ATGCACGGAG AACAACCACT
  TTACCAAGAA ACCAGAAACG GACGAGAGCG ACTCATCCGG GCCAGGGATA AGGAGCTGAG
  TGCTCATTTA GCCTCACCTT CTGGTAACAT GACTGGCAGG GTGAAGTATT CCAGCCTGCT
  TCTGCCCATA TCTGGAAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50857468	NES13520309	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36849046					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50857468	NES13520309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47776613 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	1059 bp distal
D19Dcr56	DNA Segment, Chr 19, Derry C. Roopenian 56	367 bp proximal
Rr358623	regulatory region 358623	588 bp proximal
Tssr159755	transcription start site region 159755	1045 bp upstream