rs36850621 SNP Detail

Summary

• ID
  rs36850621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52218267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACAAAA ACAAACAAAC
  AAGGAATAGT TCTCATAGAA CATCACCTAA CTCCAGGACA GTGGGTTCTG TATTCTGCTG
  TTGTGATTTT GCTTCAACCC CTCCTCAACA CCCCACGCTG TACCCTTAAA TTTATCATCA
  AAGTCAAAAC CAAGCAACTA CTGCAGTGGA CCTTGGTGAA TGGGGAATTT CATGCTTATC
  K
  CGGAATCATC ATAGCTTTGA TCCAATGCAG AAGCTAAACT TACCCTTGGA TGGTGAGGTT
  CCAGTCCATA ATCAAGAACT ATAACAAATG TAAATTCTAC TTTGACACCA AGGTCGGAGT
  TAGTGAAAAC TTTAAAGAAA TAACGTTAGG CTAAAGACAC AGTTTAGGGA CATAAATTTT
  AGAACTCAGT TTCTCAAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50950440	NES13932020	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36850621					SNP	T	T	T	T	G	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950440	NES13932020	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52218267 () rs orientation: forward

Symbol	Name	Function Class
Gls	glutaminase	within coordinates
Rr33831	regulatory region 33831	1868 bp distal
Tssr6673	transcription start site region 6673	1730 bp downstream