rs36852937 SNP Detail

Summary

• ID
  rs36852937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126911013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTTGAA CTCAGGACCT
  TTAGAAGAGC AGACAGTGCT CTTAACCACC GAGCCATCTC TCCAGCCTTG ATTTCTGTGT
  TTCTCTAAGA TAAATTTGCA AATCACCAAG AGTATGGATC CTACCTGAAA TTCTACTGGC
  CACATTCTCC CAGAATCCAC GGCCATCTTA ATTTGCTACC TCCCACTGAG GCAGTGGGAC
  Y
  GCTTATTAAG GTTGCTCCAT TCACCTGACT GAGCAATCAT AACCGGGGCT GGCTGTCGGA
  GCTGAAGGGC CAACGCTAGA GGGGGCAGGA GGTGTAAGAG GTAGTGCAGT GTGGGTTGTG
  GGTTTGAAGC TCACCAGTCA GGAAGTGAGG CCGACAGACG GAAGGGCGGG CAGGGTCGAG
  GAGTTCTGGG GCACAGCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50942023	NES14261654	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36852937					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50942023	NES14261654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126911013 () rs orientation: forward

Symbol	Name	Function Class
Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	141 bp upstream
Rr213500	regulatory region 213500	within coordinates
Rr224393	regulatory region 224393	within coordinates
Rr224394	regulatory region 224394	1987 bp proximal
Tssr96119	transcription start site region 96119	121 bp upstream
Tssr96120	transcription start site region 96120	185 bp upstream