rs36853742 SNP Detail

Summary

• ID
  rs36853742
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65844650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAATAGCAC CTGCTAGTGT TTAAGAAGGA AGCGCTGGCG
  CTCTGCTTAG CACATGATGT CCGGGCAGCT CTTTTCTCGT TGCTGGAAAT GAGGCTGTGA
  S
  TTCAGGAAGT GATGACAGGA CAGAGCACCT GCTCCTGTGT GCCAGCATCT CTGCGCACAT
  TGCTAACTCC ACAGTTGTAA ATGGGAAACT TTATCTTAGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51540569	NES14682628	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs36853742					SNP	C	C	C	C	C	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51540569	NES14682628	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65844650 () rs orientation: forward

Symbol	Name	Function Class
Rr68053	regulatory region 68053	751 bp proximal
Rr76051	regulatory region 76051	1745 bp distal
Rr76052	regulatory region 76052	591 bp distal
Rr81263	regulatory region 81263	1013 bp proximal