GGGTTCCAAG GCGACAGGCT GGAGTGAGCC AGGCGAAGGC CTCTCTCTCT TTCTTTCCCA CTCAGTTGCT ACTTCTACAC TCCCACTTGT CCCCTCCCCA AGACAGGCCA GGACTCTCCC AACAAAACCA GGCCCAGGAG AAAAAGCAGG AGGAAAGGCA GTCTGCTGCA GGCTCTGCTG CACAACATAG GATCACAGCC S GACCACTGGC ATACCTCGGA TCTCCTGGGA CAACTGGGAA ACCTGGCCAC TGAGAATACA GACCTCCAAG GGTAGGCCGA GAGGTCAATG CTGAGAACTA TAGAGAAAGC CAATGTAAGA AGTGGGGGAG ACCATTATTG GGAACTTGGG AGGCCGTGAA GGTGTGCTCA GATTCAGGGA GCCCGACTAT TACTCTGAGA S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50866216 | NES14170265 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | C | ||
ss323325378 | CHEV_10_59862653 | CHEVERUD | SCREENING_POP | f | SNP | C | C | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
||||
rs36855525 | SNP | G | G | G | G | G | G | G | G | G | C | G | G | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50866216 | NES14170265 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr10:60235684 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cdh23 | cadherin related 23 (otocadherin) | within coordinates | ||||||
Gm17455 | predicted gene, 17455 | within coordinates | ||||||
Rr215449 | regulatory region 215449 | 1484 bp distal | ||||||
Rr223077 | regulatory region 223077 | 1054 bp distal | ||||||
Rr228097 | regulatory region 228097 | within coordinates | ||||||
Tssr93633 | transcription start site region 93633 | 133 bp downstream | ||||||
Tssr93634 | transcription start site region 93634 | 100 bp downstream | ||||||
Tssr93635 | transcription start site region 93635 | 29 bp downstream | ||||||
Tssr93636 | transcription start site region 93636 | 848 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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