rs3685576 SNP Detail

Summary

• ID
  rs3685576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108888447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG CACCCCAAAG GCCTTCCTAG
  R
  TCCATATCTG TGATCCTGCT GGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5061641	WI_WGS_9_110057634	WI	MOUSE	f	SNP	G						A
ss46302952	mCV23599031	ABI	CRAMUS_MOUSE	f	SNP		G					A	G
ss61451636	NES16833316	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	G		A	G	G	A		G
ss136953546	ENSMUSSNP1253519	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss323192975	CHEV_9_108961893	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3685576					SNP	G	G	G	G	G	G	A	G	A	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451636	NES16833316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108888447 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	368 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	240 bp upstream
Rr686956	regulatory region 686956	1514 bp distal
Rr686957	regulatory region 686957	within coordinates
Rr686958	regulatory region 686958	283 bp proximal
Rr686959	regulatory region 686959	429 bp proximal
Shisa5	shisa family member 5	1602 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr91571	transcription start site region 91571	1656 bp upstream
Tssr91572	transcription start site region 91572	1108 bp upstream
Tssr91573	transcription start site region 91573	974 bp upstream
Tssr91574	transcription start site region 91574	741 bp upstream
Tssr91575	transcription start site region 91575	694 bp upstream
Tssr91576	transcription start site region 91576	608 bp upstream
Tssr91577	transcription start site region 91577	120 bp upstream
Tssr91578	transcription start site region 91578	297 bp downstream
Tssr91579	transcription start site region 91579	332 bp downstream