rs3685626 SNP Detail

Summary

• ID
  rs3685626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  107
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31120844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAGGATCA CTTTCAGATG TAGCAGAGTA AATTCAAGTT
  CTGGCTTTCA GAAGCTCAAA CATCCATAGT AAAGGGAGCA GTTTGGGCAC ACACTTGGGT
  Y
  TTGCACACAA GAAAATGTGC CCTGGGAATT ATGAAAGGAA GTGCCCAGAG CAGAGAGGTG
  TTNTTaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaCAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5061692	WI_WGS_9_31336507	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs3685626					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31120844 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Cpgi21527	CpG island 21527	1212 bp proximal
Rr206148	regulatory region 206148	556 bp proximal
Tssr84218	transcription start site region 84218	1786 bp upstream
Tssr88644	transcription start site region 88644	61 bp downstream