rs36857093 SNP Detail

Summary

• ID
  rs36857093
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110975620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTTTTT TTTTTTTTTT
  AATTTGCAGT GGGATAACAT TATCTAGAAG GAGAATCCTA GGTGGCTTGG CTTGTTCCCA
  AACAGAATTC CCAAGGCTGA AGAAAAGAAG TGGGTTATAC ATCTTCCTGA AGGCCAGGCC
  ACCAGAAAGC AGCTGTGGTT GTTAGGCAGA GGGAAACCCA TTGCTGGCCC CGGCCTACTT
  W
  CTGTTTCATA CTCTCCTCTC CGGCCACCTG CCCACACTAT GATGGCAGAG CTCTGCGGTT
  AAAATAGAGC TCCTGTAGCC TGTTAAGCCA GACCAAAGTT CATCCTGGGA ACCAATGAGT
  TTACTCGTCA CTTACAGATG GATGGTGACC CTAAAGCAGT ACACATAGGA AGATCAGCAC
  CCAGCATGGA CAATGACTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51791153	NES14722647	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36857093					SNP	A	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51791153	NES14722647	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110975620 () rs orientation: forward

Symbol	Name	Function Class
Hscb	HscB iron-sulfur cluster co-chaperone	1325 bp downstream
Rr616963	regulatory region 616963	237 bp distal
Rr616964	regulatory region 616964	within coordinates