rs3685752 SNP Detail

Summary

• ID
  rs3685752
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  107
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31120907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATAGTAAA GGGAGCAGTT TGGGCACACA CTTGGGTNTT
  GCACACAAGA AAATGTGCCC TGGGAATTAT GAAAGGAAGT GCCCAGAGCA GAGAGGTGTT
  W
  TTaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaCAGGTGC AAAAGATTAA TTTAGTCAAC
  ACCAAGCAAC ACTAAAGATC CGCCAATCAA TAATTCTGTG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J
ss5061819	WI_WGS_9_31336570	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J
rs3685752					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31120907 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Cpgi21527	CpG island 21527	1149 bp proximal
Rr206148	regulatory region 206148	493 bp proximal
Tssr84218	transcription start site region 84218	1723 bp upstream
Tssr88644	transcription start site region 88644	within coordinates