rs36857693 SNP Detail

Summary

• ID
  rs36857693
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99508268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCT GCCGTCGCCG GTTGCCGCCT
  M
  CGTTGCTAGC CACATCCTCG CGGTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51920256	NES14942857	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	A	A	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36857693					SNP	C	C	C	C	C	A	A	A	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51920256	NES14942857	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99508268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19472	CpG island 19472	within coordinates
Rr400465	regulatory region 400465	within coordinates
Rr652012	regulatory region 652012	within coordinates
Spcs2	signal peptidase complex subunit 2 homolog (S. cerevisiae)	within coordinates
Tssr68077	transcription start site region 68077	within coordinates
Tssr68078	transcription start site region 68078	62 bp upstream
Tssr73711	transcription start site region 73711	758 bp upstream
Tssr73712	transcription start site region 73712	155 bp upstream
Tssr73713	transcription start site region 73713	140 bp upstream
Tssr73714	transcription start site region 73714	54 bp upstream
Xrra1	X-ray radiation resistance associated 1	157 bp upstream