rs36858009 SNP Detail

Summary

• ID
  rs36858009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131000793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGTTGA CCTTGAACTT
  TGATCCTCCT GCCTCCACCA TCTGAGTGCT GGGATTACCG GCATGTACCA CCACCCGTGG
  TTTGCTGGCA CTGGAGACCA CGCCTGTTTT ATAAATGTGA TCTTTTCATT GCTGATCGCT
  TAGGAATAGT TTACCCCACC TTTGCATGTC CAGCCATGAC GGAGAAGGCC CTCGGAAGTA
  Y
  AGTGTGCCCA GGGCCAGCTC TCAGTCATGG ACTAAATGCA GCTTTTGCTT CAACAGTTTT
  AGAGCTACCT ATTTCGTGTG AAATGCACTG CAGTACTTAA GAGTTGGAAC TTGATTTAAT
  ACCTTTCATG ATTATATATG TAATCATGAT TTCATATGTA TGTATGTATA TATTATATAC
  TTGATATATT TGATATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634448	NES14649237	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36858009					SNP	C	C	C	C	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634448	NES14649237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131000793 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	Intron
Rr367559	regulatory region 367559	1437 bp upstream
Rr585291	regulatory region 585291	551 bp proximal
Rr585292	regulatory region 585292	994 bp proximal
Rr585293	regulatory region 585293	1182 bp proximal
Tssr31722	transcription start site region 31722	620 bp downstream