rs3685876 SNP Detail

Summary

• ID
  rs3685876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142909254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACC CAGAGGTGAG ATGAGGTGTC
  R
  ATTTCCTGGA ACTGGAATTA CAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5061945	WI_WGS_5_142055452	WI	MOUSE	f	SNP	A			G
ss45754389	mCV23734238	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss144594108	ENSMUSSNP6134719	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3685876					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142909254 () rs orientation: forward

Symbol	Name	Function Class
Rr624055	regulatory region 624055	1750 bp distal
Rr624056	regulatory region 624056	649 bp distal
Rr624057	regulatory region 624057	38 bp proximal