rs36858806 SNP Detail

Summary

• ID
  rs36858806
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:23116501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACATTT TCAAATGCTT
  CTAGACCACA GTGCTGTAAG AGAGGACACC ATCCCTGTCT TTGTATCTTC ACAGGGGACA
  CTCTAGACAT CTTGGAGTGG CTGCAGGCTA AGCTATGGCA CATTATCAAA AAATCCCCAC
  GGTGCAGACT CAATGATCAT AATAAATTGG TTGTTCTGGG TTGCTATGCA CCAATAGTTA
  S
  CAGAATGCAG GCTAAATTCT TACTTTCCAG TAACCTGGCT TGGAAATACA GGGCAGCAGT
  TCTGCACAGA CTTCTTGGCT TGATCCCTCT GGCGTCCTTT GAGACAAAAC TGGCCACACA
  GATGAACCAG CTGCCTTATC AATACCTCCC CTAACTTGGC TCCTAGGTTC TAATCTGTTC
  TCTTTCCATC CTTCATTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51994659	NES15009147	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36858806					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51994659	NES15009147	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:23116501 () rs orientation: forward

Symbol	Name	Function Class
Gm68239	predicted gene, 68239	within coordinates
Rr675323	regulatory region 675323	831 bp distal
Rr675324	regulatory region 675324	within coordinates