rs36859551 SNP Detail

Summary

• ID
  rs36859551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72534753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCGTCT GTGTCTTGAG
  TGCCGAGGTC AAGCCTGTGC CATCACTCAC GGCATAGTTT CCCTGCCTGT GGGGACAGTT
  TCTCAGTGGT GGGCAGGACA GAGGCAGCTG GTTGTGATGA GCCTGTCTGG CTTCTCTGCA
  GAACATCTTT GCCTGGTGTG GTGGAAAGTC CAACATCCTT GAGCGCAACA AGGCGAGGGA
  Y
  CTGGCCCTGG CCATCAGGGA CAGCGAGCGG CAGGGCAAGG CCCAGGTGGA AATCATCACT
  GATGGAGAGG AGCCAGCCGA GATGATTCAG GTTGGGGATC TTGGGGTGGG CAGCTGGGAG
  ATGCTGTTTG GATGTGGTCA GGAGAGACAG CGATAAGCTG GGAGCATGAA GATGGCTGAC
  AGAGGATTGG CAGGGGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51696108	NES14820948	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36859551					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51696108	NES14820948	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72534753 () rs orientation: forward

Symbol	Name	Function Class
Capg	capping actin protein, gelsolin like	within coordinates
Tssr57142	transcription start site region 57142	1967 bp downstream
Tssr57143	transcription start site region 57143	1941 bp downstream
Tssr57144	transcription start site region 57144	1652 bp downstream
Tssr57145	transcription start site region 57145	1612 bp downstream
Tssr57146	transcription start site region 57146	1593 bp downstream
Tssr57147	transcription start site region 57147	427 bp downstream
Tssr57148	transcription start site region 57148	903 bp upstream
Tssr57149	transcription start site region 57149	996 bp upstream
Tssr61469	transcription start site region 61469	19 bp downstream