rs36859852 SNP Detail

Summary

• ID
  rs36859852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145350860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGAATAT TTCTTAAAAT
  TCATAGAATG CCTAAGACTC CAAGGTCATT CTATAACACT CTGGTCTTAA GTCTACAAAA
  CAAAAAACCA TCCCAGAATC ACAAAGCCGG GATGATGGGG AGAGAGGCAT GAGGGGGTCT
  TTATTATGGT TGCTGGTATA CTGTCGTTAG TACATACATC ACAATGCATG TTGATACAGT
  Y
  GACTTCCATG TCATATCTGT AAAGAGAGTA GCTTTTGTCT TCACAATAAT GGAACTAAAC
  AAGATCTACT CCGGGTATAC TTGATCTTGT ATGGTCTGAG GACTGTAATT TCATTCTTGG
  CTGCTTTTGA GTTCTTCAGT ATTTTCTGTA TCACTGTATT TATATTTCTG TTGTACTTTC
  CTGTCCAAAT AAAGGGGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51671174	NES14639316	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36859852					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51671174	NES14639316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145350860 () rs orientation: forward

Symbol	Name	Function Class
Ccn1	cellular communication network factor 1	1871 bp downstream
Rr586808	regulatory region 586808	1895 bp distal
Rr586809	regulatory region 586809	510 bp proximal